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Research Guide

Interpreting HPLC Purity Data

High-performance liquid chromatography (HPLC) separates the components of a sample so they can be measured individually. On a peptide COA it is the primary evidence of purity.

Reading the chromatogram

The horizontal axis is time; the vertical axis is detector response. Each peak represents a compound eluting from the column at a characteristic time. The large, dominant peak is your target peptide.

The main-peak percentage

Purity is reported as the area of the main peak divided by the total area of all peaks. A figure such as 98–99% means the overwhelming majority of the material is the target compound.

Look beyond the headline number

  • Number of impurity peaks — a few tiny peaks differ from many moderate ones.
  • Peak shape — sharp, symmetrical peaks suggest a clean separation.
  • Baseline — a flat, stable baseline indicates a well-run method.

Pair it with identity

HPLC tells you how pure the material is; it does not by itself confirm what the material is. That is why a complete COA pairs HPLC purity with mass spectrometry identity.

Research use only.

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